CellMap-Data: the Docs

CellMap-Data: the Docs#

This library provides a collection of classes and functions for working with cellmap data, specifically for the CellMap project team training machine learning models. The capabilities include loading data from the CellMap ZarrDataset, transforming data, and splitting data into training and validation sets. Functionality is not provided for writing data.

Contents#

cellmap_data

CellMap Data Loading Module.

cellmap_data.CellMapImage(path, ...[, pad, ...])

Initializes a CellMapImage object.

cellmap_data.CellMapDataset(raw_path, ...[, ...])

Initializes the CellMapDataset class.

cellmap_data.CellMapMultiDataset(classes, ...)

This class is used to combine multiple datasets into a single dataset.

cellmap_data.CellMapSubset(dataset, indices)

cellmap_data.CellMapDataSplit(input_arrays, ...)

Initializes the CellMapDatasets class.

cellmap_data.CellMapDataLoader(dataset, classes)

Initialize the CellMapDataLoader

cellmap_data.transforms

cellmap_data.utils