Source code for cellmap_data.subdataset

from typing import Callable, Sequence
from torch.utils.data import Subset
from .dataset import CellMapDataset

from .multidataset import CellMapMultiDataset




class CellMapSubset(Subset):
    """
    This subclasses PyTorch Subset to wrap a CellMapDataset or CellMapMultiDataset object under a common API, which can be used for dataloading. It maintains the same API as the Subset class. It retrieves raw and groundtruth data from a CellMapDataset or CellMapMultiDataset object.
    """



    def __init__(
        self,
        dataset: CellMapDataset | CellMapMultiDataset,
        indices: Sequence[int],
    ) -> None:
        """
        Args:
            dataset: CellMapDataset | CellMapMultiDataset
                The dataset to be subsetted.
            indices: Sequence[int]
                The indices of the dataset to be used as the subset.
        """
        super().__init__(dataset, indices)


    @property
    def classes(self) -> Sequence[str]:
        """The classes in the dataset."""
        return self.dataset.classes

    @property
    def class_counts(self) -> dict[str, float]:
        """The number of samples in each class in the dataset normalized by resolution."""
        return self.dataset.class_counts

    @property
    def class_weights(self) -> dict[str, float]:
        """The class weights for the dataset based on the number of samples in each class."""
        return self.dataset.class_weights

    @property
    def validation_indices(self) -> Sequence[int]:
        """The indices of the validation set."""
        return self.dataset.validation_indices



    def to(self, device) -> "CellMapSubset":
        """Move the dataset to the specified device."""
        self.dataset.to(device)
        return self




    def set_raw_value_transforms(self, transforms: Callable) -> None:
        """Sets the raw value transforms for the subset dataset."""
        self.dataset.set_raw_value_transforms(transforms)




    def set_target_value_transforms(self, transforms: Callable) -> None:
        """Sets the target value transforms for the subset dataset."""
        self.dataset.set_target_value_transforms(transforms)