cellmap_flow.cli.server_cli
===========================

.. py:module:: cellmap_flow.cli.server_cli


Attributes
----------

.. autoapisummary::

   cellmap_flow.cli.server_cli.logger


Functions
---------

.. autoapisummary::

   cellmap_flow.cli.server_cli.cli
   cellmap_flow.cli.server_cli.dacapo
   cellmap_flow.cli.server_cli.fly
   cellmap_flow.cli.server_cli.script
   cellmap_flow.cli.server_cli.bioimage
   cellmap_flow.cli.server_cli.run_server
   cellmap_flow.cli.server_cli.cellmap_model
   cellmap_flow.cli.server_cli.run_ui_server


Module Contents
---------------

.. py:function:: cli(log_level)

   Command-line interface for the Cellmap flo application.

   :param log_level: The desired log level for the application.
   :type log_level: str

   .. rubric:: Examples

   To use Dacapo run the following commands:
   ```
   cellmap_flow_server dacapo -r my_run -i iteration -d data_path
   ```

   To use custom script
   ```
   cellmap_flow_server script -s script_path -d data_path
   ```

   To use bioimage-io model
   ```
   cellmap_flow_server bioimage -m model_path -d data_path
   ```


.. py:data:: logger

.. py:function:: dacapo(run_name, iteration, data_path, debug, port, certfile, keyfile)

   Run the CellMapFlow server with a DaCapo model.


.. py:function:: fly(checkpoint, channels, input_voxel_size, output_voxel_size, data_path)

   Run the CellMapFlow server with a Fly model.


.. py:function:: script(script_path, data_path, debug, port, certfile, keyfile)

   Run the CellMapFlow server with a custom script.


.. py:function:: bioimage(model_path, data_path, edge_length_to_process, debug, port, certfile, keyfile)

   Run the CellMapFlow server with a bioimage-io model.


.. py:function:: run_server(model_config, data_path, debug=False, port=0, certfile=None, keyfile=None)

.. py:function:: cellmap_model(folder_path, name, data_path, debug, port, certfile, keyfile)

   Run the CellMapFlow server with a CellMap model.


.. py:function:: run_ui_server(neuroglancer_url, inference_host)