cellmap_flow.post.postprocessors
================================

.. py:module:: cellmap_flow.post.postprocessors


Attributes
----------

.. autoapisummary::

   cellmap_flow.post.postprocessors.postprocessing_lock
   cellmap_flow.post.postprocessors.logger
   cellmap_flow.post.postprocessors.PostProcessorMethods


Classes
-------

.. autoapisummary::

   cellmap_flow.post.postprocessors.PostProcessor
   cellmap_flow.post.postprocessors.DefaultPostprocessor
   cellmap_flow.post.postprocessors.ThresholdPostprocessor
   cellmap_flow.post.postprocessors.LabelPostprocessor
   cellmap_flow.post.postprocessors.MortonSegmentationRelabeling
   cellmap_flow.post.postprocessors.AffinityPostprocessor
   cellmap_flow.post.postprocessors.SimpleBlockwiseMerger
   cellmap_flow.post.postprocessors.ChannelSelection
   cellmap_flow.post.postprocessors.LambdaPostprocessor


Functions
---------

.. autoapisummary::

   cellmap_flow.post.postprocessors.get_postprocessors_list
   cellmap_flow.post.postprocessors.get_postprocessors


Module Contents
---------------

.. py:data:: postprocessing_lock

.. py:data:: logger

.. py:class:: PostProcessor



   Base class for post-processing methods.


   .. py:property:: is_segmentation


.. py:class:: DefaultPostprocessor(clip_min: float = -1.0, clip_max: float = 1.0, bias: float = 1.0, multiplier: float = 127.5)



   Base class for post-processing methods.


   .. py:attribute:: clip_min


   .. py:attribute:: clip_max


   .. py:attribute:: bias


   .. py:attribute:: multiplier


   .. py:property:: dtype


   .. py:property:: is_segmentation


.. py:class:: ThresholdPostprocessor(threshold: float = 0.5)



   Base class for post-processing methods.


   .. py:attribute:: threshold


   .. py:property:: dtype


   .. py:property:: is_segmentation


.. py:class:: LabelPostprocessor(channel: int = 0)



   Base class for post-processing methods.


   .. py:attribute:: channel
      :value: 0



   .. py:property:: dtype


   .. py:property:: is_segmentation


.. py:class:: MortonSegmentationRelabeling(channel: int = 0)



   Base class for post-processing methods.


   .. py:attribute:: channel
      :value: 0



   .. py:attribute:: num_previous_segments
      :value: 0



   .. py:attribute:: use_exact
      :value: True



   .. py:property:: dtype


   .. py:property:: is_segmentation


.. py:class:: AffinityPostprocessor(bias: float = 0.0, neighborhood: str = '[\n                [1, 0, 0],\n                [0, 1, 0],\n                [0, 0, 1],\n                [3, 0, 0],\n                [0, 3, 0],\n                [0, 0, 3],\n                [9, 0, 0],\n                [0, 9, 0],\n                [0, 0, 9],\n            ]')



   Base class for post-processing methods.


   .. py:attribute:: bias


   .. py:attribute:: neighborhood


   .. py:attribute:: use_exact
      :value: True



   .. py:attribute:: num_previous_segments
      :value: 0



   .. py:property:: dtype


   .. py:property:: is_segmentation


   .. py:property:: num_channels


.. py:class:: SimpleBlockwiseMerger(channel: int = 0, face_erosion_iterations: int = 0)



   Base class for post-processing methods.


   .. py:attribute:: channel
      :value: 0



   .. py:attribute:: face_erosion_iterations
      :value: 0



   .. py:attribute:: use_exact
      :value: True



   .. py:attribute:: equivalences


   .. py:attribute:: chunk_slice_position_to_coords_id_dict


   .. py:attribute:: slices


   .. py:attribute:: keys_to_skip


   .. py:method:: calculate_equivalences()


   .. py:property:: dtype


   .. py:property:: is_segmentation


.. py:class:: ChannelSelection(channels: str = '0')



   Base class for post-processing methods.


   .. py:attribute:: channels


   .. py:property:: num_channels


.. py:class:: LambdaPostprocessor(expression: str)



   Base class for post-processing methods.


   .. py:attribute:: expression


   .. py:property:: dtype


.. py:function:: get_postprocessors_list() -> list[dict]

   Returns a list of dictionaries containing the names and parameters of all subclasses of PostProcessor.


.. py:function:: get_postprocessors(elms: dict) -> list[PostProcessor]

.. py:data:: PostProcessorMethods