Index

B

boundary_only (topo.config.ClassConfig attribute)

boundary_width (topo.config.ClassConfig attribute) build_spatial_mask() (in module topo.stitch)

C

ClassConfig (class in topo.config) cluster_convergence() (in module topo.postprocess) compact_relabel() (in module topo.postprocess) compute_boundary_map() (in module topo.flow)

compute_flow_targets() (in module topo.flow) compute_flow_targets_gpu() (in module topo.flow_gpu) compute_subcrop_slices() (in module topo.stitch) cosine_blend_weight() (in module topo.stitch)

D

diffusion_iters (topo.config.ClassConfig attribute)

E

EVALUATED_INSTANCE_CLASSES (in module topo.config)

F

filter_small() (in module topo.postprocess)

flow_type (topo.config.ClassConfig attribute)

G

generate_diffusion_flows() (in module topo.flow) generate_diffusion_flows_gpu() (in module topo.flow_gpu) generate_direct_flows() (in module topo.flow)

generate_direct_flows_gpu() (in module topo.flow_gpu) get_instance_class_config() (in module topo.config) get_postprocess_config() (in module topo.config) group (topo.config.ClassConfig attribute)

L

logger (in module topo.postprocess) (in module topo.postprocess_gpu)

M

module topo topo.config topo.flow topo.flow_gpu topo.postprocess topo.postprocess_gpu topo.stitch

P

postprocess_single() (in module topo.postprocess)

postprocess_single_gpu() (in module topo.postprocess_gpu)

R

remove_bad_flow_masks() (in module topo.postprocess) RESOLUTION (in module topo.config)

run_instance_segmentation() (in module topo.postprocess) run_instance_segmentation_gpu() (in module topo.postprocess_gpu)

S

split_disconnected() (in module topo.postprocess) stitch_flows() (in module topo.stitch)

stitch_labels() (in module topo.stitch) stitch_volumes() (in module topo.stitch)

T

topo module topo.config module topo.flow module topo.flow_gpu module

topo.postprocess module topo.postprocess_gpu module topo.stitch module track_flows() (in module topo.postprocess) track_flows_gpu() (in module topo.postprocess_gpu)