cellmap_flow.globals

Attributes

logger

input_norms

postprocess

viewer

g

Classes

Flow

Module Contents

cellmap_flow.globals.logger
cellmap_flow.globals.input_norms = []
cellmap_flow.globals.postprocess = []
cellmap_flow.globals.viewer = None
class cellmap_flow.globals.Flow
jobs: List[Any]
models_config: List[Any]
servers: List[Any]
raw: Any | None
input_norms: List[Any]
postprocess: List[Any]
viewer: Any | None
dataset_path: str | None
model_catalog: dict
queue: str
charge_group: str
nb_cores_master: int
nb_cores_worker: int
nb_workers: int
tmp_dir: str | None
blockwise_tasks_dir: str | None
neuroglancer_thread: Any | None
pipeline_inputs: List[Any]
pipeline_outputs: List[Any]
pipeline_edges: List[Any]
pipeline_normalizers: List[Any]
pipeline_models: List[Any]
pipeline_postprocessors: List[Any]
to_dict()
get_output_dtype(model_output_dtype)
classmethod run(zarr_path, model_configs, queue='gpu_h100', charge_group='cellmap', input_normalizers=None, post_processors=None)
classmethod stop()
classmethod delete()
cellmap_flow.globals.g