cellmap_flow.portable.pasted
A dataset path as a person pastes it, as cellmap-flow reads it.
A path copied from Neuroglancer’s source field names its format as well as
its location: in front, as zarr://, zarr2://, zarr3:// or
n5:// (zarr://https://host/x.zarr/raw), or after it in Neuroglancer’s
newer pipeline form, as |zarr:, |zarr2:, |zarr3:, |n5: or
|neuroglancer-precomputed: (gs://bucket/x.zarr/raw|zarr2:), where
what follows the colon is a path inside the location
(gs://bucket/x.zarr|zarr2:raw is gs://bucket/x.zarr/raw).
cellmap-flow finds a zarr’s or an N5’s format itself, so pasted_path
drops the format and keeps the location; a precomputed volume is named
precomputed://<location>, as cellmap-flow names it (io/paths.py,
the browser’s web/src/backend/routes/data.ts), and that form is kept as
it is. Blanks and quotes around the text go too. Anything else, a local
path or a URL (gs://, s3://, https://, file://) or a format
cellmap-flow does not read (graphene://), is left as it is.
Called where a person gives a dataset: the CLIs’ -d (view,
infer <type>, add --run), a YAML’s data_path (config/yaml.py
load_config, for cellmap_flow yaml and blockwise tasks), and the
dashboard’s dataset field and box tool (dashboard/requests.py SetData
and BbxGenerator). The browser’s twin, web/src/shared/pasted.ts
pastedPath, applies the same pattern, which build/export_data.py
exports, to its dataset field (routes/data.ts) and its ?dataset=
links (web/src/link.ts parseLink); both are held to one table of cases,
web/test/fixtures/pasted_paths.json.
Attributes
Functions
|
The dataset |
Module Contents
- cellmap_flow.portable.pasted.NEUROGLANCER_SOURCE
- cellmap_flow.portable.pasted.pasted_path(text: str) str
The dataset
textnames, without the Neuroglancer format around it.