cellmap_flow.cli.viewer_cli

Simple CLI for viewing datasets with CellMap Flow without requiring model configs.

Attributes

logger

Functions

main(dataset, project, resample)

Start CellMap Flow viewer with a dataset.

Module Contents

cellmap_flow.cli.viewer_cli.logger

cellmap_flow.cli.viewer_cli.main(dataset, project, resample)

Start CellMap Flow viewer with a dataset.

Opens neuroglancer on the raw data and starts the dashboard, where models can be picked and submitted interactively. Use cellmap_flow yaml instead to launch models from a config file.

The dashboard’s Resample box starts ticked, so the models launched from it read the data resampled to their voxel size when it has no level at it; --no-resample starts it unticked.

Example:



cellmap_flow view -d /path/to/dataset.zarr