cellmap_flow.cli.server_cli

Attributes

logger

Functions

cli(log_level)	Command-line interface for the Cellmap flo application.
dacapo(run_name, iteration, data_path, debug, port, ...)	Run the CellMapFlow server with a DaCapo model.
fly(checkpoint, channels, input_voxel_size, ...)	Run the CellMapFlow server with a Fly model.
script(script_path, data_path, debug, port, certfile, ...)	Run the CellMapFlow server with a custom script.
bioimage(model_path, data_path, ...)	Run the CellMapFlow server with a bioimage-io model.
run_server(model_config, data_path[, debug, port, ...])
cellmap_model(folder_path, name, data_path, debug, ...)	Run the CellMapFlow server with a CellMap model.
run_ui_server(neuroglancer_url, inference_host)

Module Contents

cellmap_flow.cli.server_cli.cli(log_level)

Command-line interface for the Cellmap flo application.

Parameters:

log_level (str) – The desired log level for the application.

Examples

To use Dacapo run the following commands: ` cellmap_flow_server dacapo -r my_run -i iteration -d data_path `

To use custom script ` cellmap_flow_server script -s script_path -d data_path `

To use bioimage-io model ` cellmap_flow_server bioimage -m model_path -d data_path `

cellmap_flow.cli.server_cli.logger

cellmap_flow.cli.server_cli.dacapo(run_name, iteration, data_path, debug, port, certfile, keyfile)

Run the CellMapFlow server with a DaCapo model.

cellmap_flow.cli.server_cli.fly(checkpoint, channels, input_voxel_size, output_voxel_size, data_path)

Run the CellMapFlow server with a Fly model.

cellmap_flow.cli.server_cli.script(script_path, data_path, debug, port, certfile, keyfile)

Run the CellMapFlow server with a custom script.

cellmap_flow.cli.server_cli.bioimage(model_path, data_path, edge_length_to_process, debug, port, certfile, keyfile)

Run the CellMapFlow server with a bioimage-io model.

cellmap_flow.cli.server_cli.run_server(model_config, data_path, debug=False, port=0, certfile=None, keyfile=None)

cellmap_flow.cli.server_cli.cellmap_model(folder_path, name, data_path, debug, port, certfile, keyfile)

Run the CellMapFlow server with a CellMap model.

cellmap_flow.cli.server_cli.run_ui_server(neuroglancer_url, inference_host)