cellmap_flow.utils.bsub_utils

Attributes

logger
security
SERVER_COMMAND
logger

Classes

Job

Functions

cleanup(signum, frame)
is_bsub_available()
submit_bsub_job(command[, queue, charge_group, job_name])
parse_bpeek_output(job_id)
get_host_from_stdout(output)
run_locally(sc, name)
start_hosts(command[, queue, charge_group, job_name])

Module Contents

cellmap_flow.utils.bsub_utils.logger

cellmap_flow.utils.bsub_utils.security = 'http'

cellmap_flow.utils.bsub_utils.SERVER_COMMAND = 'cellmap_flow_server'

class cellmap_flow.utils.bsub_utils.Job(job_id=None, model_name=None, status='running', host=None, process=None)

job_id = None

model_name = None

status = 'running'

host = None

process = None

kill()

cellmap_flow.utils.bsub_utils.cleanup(signum, frame)

cellmap_flow.utils.bsub_utils.logger

cellmap_flow.utils.bsub_utils.is_bsub_available()

cellmap_flow.utils.bsub_utils.submit_bsub_job(command, queue='gpu_h100', charge_group='cellmap', job_name='my_job')

cellmap_flow.utils.bsub_utils.parse_bpeek_output(job_id)

cellmap_flow.utils.bsub_utils.get_host_from_stdout(output)

cellmap_flow.utils.bsub_utils.run_locally(sc, name)

cellmap_flow.utils.bsub_utils.start_hosts(command, queue='gpu_h100', charge_group='cellmap', job_name='example_job')