cellmap_flow.cli.infer

cellmap_flow infer <type>: start a model’s inference server, then open the viewer on its predictions and serve the dashboard.

There is a subcommand for each model type (models.registry), built when click asks for it. It takes the type’s constructor arguments as options (registry.click_options), and the dataset (-d), queue (-q), billing project (-P), --resample, --server-check and --env (the environment the server runs in, models.envs) as its own.

run, the generic form before 0.3.0 (cellmap_flow run -m TYPE -c key=value), is a deprecated alias: it says which infer command it stands for, and runs it.

Attributes

`logger`
`infer`

Functions

`run_generic`(ctx, model_type, data_path, queue, ...)	`cellmap_flow run -m TYPE -c key=value`, the form before 0.3.0:
`create_dynamic_command`(cli_name, config_class)	Dynamically create a Click command for a ModelConfig subclass.

Module Contents

cellmap_flow.cli.infer.logger

cellmap_flow.cli.infer.run_generic(ctx, model_type, data_path, queue, project, config, server_check): cellmap_flow run -m TYPE -c key=value, the form before 0.3.0: cellmap_flow infer TYPE --key value, which it prints and runs.

cellmap_flow.cli.infer.create_dynamic_command(cli_name: str, config_class: Type[cellmap_flow.models.models_config.ModelConfig]): Dynamically create a Click command for a ModelConfig subclass.

cellmap_flow.cli.infer.infer