cellmap_flow.post.postprocessors

Attributes

postprocessing_lock
logger
PostProcessorMethods

Classes

PostProcessor	Base class for post-processing methods.
DefaultPostprocessor	Base class for post-processing methods.
ThresholdPostprocessor	Base class for post-processing methods.
LabelPostprocessor	Base class for post-processing methods.
MortonSegmentationRelabeling	Base class for post-processing methods.
AffinityPostprocessor	Base class for post-processing methods.
SimpleBlockwiseMerger	Base class for post-processing methods.
ChannelSelection	Base class for post-processing methods.
LambdaPostprocessor	Base class for post-processing methods.

Functions

get_postprocessors_list(→ list[dict])	Returns a list of dictionaries containing the names and parameters of all subclasses of PostProcessor.
get_postprocessors(→ list[PostProcessor])

Module Contents

cellmap_flow.post.postprocessors.postprocessing_lock

cellmap_flow.post.postprocessors.logger

class cellmap_flow.post.postprocessors.PostProcessor

Base class for post-processing methods.

property is_segmentation

class cellmap_flow.post.postprocessors.DefaultPostprocessor(clip_min: float = -1.0, clip_max: float = 1.0, bias: float = 1.0, multiplier: float = 127.5)

Base class for post-processing methods.

clip_min

clip_max

bias

multiplier

property dtype

property is_segmentation

class cellmap_flow.post.postprocessors.ThresholdPostprocessor(threshold: float = 0.5)

Base class for post-processing methods.

threshold

property dtype

property is_segmentation

class cellmap_flow.post.postprocessors.LabelPostprocessor(channel: int = 0)

Base class for post-processing methods.

channel = 0

property dtype

property is_segmentation

class cellmap_flow.post.postprocessors.MortonSegmentationRelabeling(channel: int = 0)

Base class for post-processing methods.

channel = 0

num_previous_segments = 0

use_exact = True

property dtype

property is_segmentation

class cellmap_flow.post.postprocessors.AffinityPostprocessor(bias: float = 0.0, neighborhood: str = '[\n                [1, 0, 0],\n                [0, 1, 0],\n                [0, 0, 1],\n                [3, 0, 0],\n                [0, 3, 0],\n                [0, 0, 3],\n                [9, 0, 0],\n                [0, 9, 0],\n                [0, 0, 9],\n            ]')

Base class for post-processing methods.

bias

neighborhood

use_exact = True

num_previous_segments = 0

property dtype

property is_segmentation

property num_channels

class cellmap_flow.post.postprocessors.SimpleBlockwiseMerger(channel: int = 0, face_erosion_iterations: int = 0)

Base class for post-processing methods.

channel = 0

face_erosion_iterations = 0

use_exact = True

equivalences

chunk_slice_position_to_coords_id_dict

slices

keys_to_skip

calculate_equivalences()

property dtype

property is_segmentation

class cellmap_flow.post.postprocessors.ChannelSelection(channels: str = '0')

Base class for post-processing methods.

channels

property num_channels

class cellmap_flow.post.postprocessors.LambdaPostprocessor(expression: str)

Base class for post-processing methods.

expression

property dtype

cellmap_flow.post.postprocessors.get_postprocessors_list() → list[dict]

Returns a list of dictionaries containing the names and parameters of all subclasses of PostProcessor.

cellmap_flow.post.postprocessors.get_postprocessors(elms: dict) → list[PostProcessor]

cellmap_flow.post.postprocessors.PostProcessorMethods