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dacapo
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dacapo command line option
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dacapo-apply command line option
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dacapo-predict command line option
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dacapo-run-blockwise command line option
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dacapo-segment-blockwise command line option
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dacapo-train command line option
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dacapo-validate command line option
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dacapo.apply
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dacapo.blockwise
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dacapo.blockwise.argmax_worker
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dacapo.blockwise.blockwise_task
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dacapo.blockwise.empanada_function
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dacapo.blockwise.predict_worker
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dacapo.blockwise.relabel_worker
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dacapo.blockwise.scheduler
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dacapo.blockwise.segment_worker
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dacapo.blockwise.threshold_worker
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dacapo.blockwise.watershed_function
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dacapo.compute_context
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dacapo.compute_context.bsub
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dacapo.compute_context.compute_context
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dacapo.compute_context.local_torch
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dacapo.experiments
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dacapo.experiments.architectures
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dacapo.experiments.architectures.architecture
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dacapo.experiments.architectures.architecture_config
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dacapo.experiments.architectures.cnnectome_unet
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dacapo.experiments.architectures.cnnectome_unet_config
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dacapo.experiments.architectures.dummy_architecture
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dacapo.experiments.architectures.dummy_architecture_config
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dacapo.experiments.arraytypes
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dacapo.experiments.arraytypes.annotations
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dacapo.experiments.arraytypes.arraytype
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dacapo.experiments.arraytypes.binary
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dacapo.experiments.arraytypes.distances
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dacapo.experiments.arraytypes.embedding
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dacapo.experiments.arraytypes.intensities
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dacapo.experiments.arraytypes.mask
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dacapo.experiments.arraytypes.probabilities
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dacapo.experiments.datasplits
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dacapo.experiments.datasplits.datasets
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dacapo.experiments.datasplits.datasets.arrays
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dacapo.experiments.datasplits.datasets.arrays.array_config
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dacapo.experiments.datasplits.datasets.arrays.binarize_array_config
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dacapo.experiments.datasplits.datasets.arrays.concat_array_config
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dacapo.experiments.datasplits.datasets.arrays.constant_array_config
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dacapo.experiments.datasplits.datasets.arrays.crop_array_config
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dacapo.experiments.datasplits.datasets.arrays.dummy_array_config
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dacapo.experiments.datasplits.datasets.arrays.dvid_array_config
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dacapo.experiments.datasplits.datasets.arrays.intensity_array_config
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dacapo.experiments.datasplits.datasets.arrays.logical_or_array_config
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dacapo.experiments.datasplits.datasets.arrays.merge_instances_array_config
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dacapo.experiments.datasplits.datasets.arrays.missing_annotations_mask_config
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dacapo.experiments.datasplits.datasets.arrays.ones_array_config
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dacapo.experiments.datasplits.datasets.arrays.resampled_array_config
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dacapo.experiments.datasplits.datasets.arrays.sum_array_config
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dacapo.experiments.datasplits.datasets.arrays.tiff_array_config
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dacapo.experiments.datasplits.datasets.arrays.zarr_array_config
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dacapo.experiments.datasplits.datasets.dataset
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dacapo.experiments.datasplits.datasets.dataset_config
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dacapo.experiments.datasplits.datasets.dummy_dataset
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dacapo.experiments.datasplits.datasets.dummy_dataset_config
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dacapo.experiments.datasplits.datasets.graphstores
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dacapo.experiments.datasplits.datasets.graphstores.graph_source_config
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dacapo.experiments.datasplits.datasets.raw_gt_dataset
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dacapo.experiments.datasplits.datasets.raw_gt_dataset_config
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dacapo.experiments.datasplits.datasets.simple
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dacapo.experiments.datasplits.datasplit
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dacapo.experiments.datasplits.datasplit_config
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dacapo.experiments.datasplits.datasplit_generator
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dacapo.experiments.datasplits.dummy_datasplit
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dacapo.experiments.datasplits.dummy_datasplit_config
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dacapo.experiments.datasplits.keys
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dacapo.experiments.datasplits.keys.keys
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dacapo.experiments.datasplits.simple_config
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dacapo.experiments.datasplits.train_validate_datasplit
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dacapo.experiments.datasplits.train_validate_datasplit_config
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dacapo.experiments.model
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dacapo.experiments.run
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dacapo.experiments.run_config
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dacapo.experiments.starts
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dacapo.experiments.starts.cosem_start
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dacapo.experiments.starts.cosem_start_config
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dacapo.experiments.starts.start
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dacapo.experiments.starts.start_config
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dacapo.experiments.tasks
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dacapo.experiments.tasks.affinities_task
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dacapo.experiments.tasks.affinities_task_config
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dacapo.experiments.tasks.distance_task
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dacapo.experiments.tasks.distance_task_config
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dacapo.experiments.tasks.dummy_task
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dacapo.experiments.tasks.dummy_task_config
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dacapo.experiments.tasks.evaluators
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dacapo.experiments.tasks.evaluators.binary_segmentation_evaluation_scores
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dacapo.experiments.tasks.evaluators.binary_segmentation_evaluator
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dacapo.experiments.tasks.evaluators.dummy_evaluation_scores
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dacapo.experiments.tasks.evaluators.dummy_evaluator
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dacapo.experiments.tasks.evaluators.evaluation_scores
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dacapo.experiments.tasks.evaluators.evaluator
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dacapo.experiments.tasks.evaluators.instance_evaluation_scores
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dacapo.experiments.tasks.evaluators.instance_evaluator
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dacapo.experiments.tasks.hot_distance_task
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dacapo.experiments.tasks.hot_distance_task_config
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dacapo.experiments.tasks.inner_distance_task
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dacapo.experiments.tasks.inner_distance_task_config
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dacapo.experiments.tasks.losses
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dacapo.experiments.tasks.losses.affinities_loss
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dacapo.experiments.tasks.losses.dummy_loss
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dacapo.experiments.tasks.losses.hot_distance_loss
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dacapo.experiments.tasks.losses.loss
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dacapo.experiments.tasks.losses.mse_loss
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dacapo.experiments.tasks.one_hot_task
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dacapo.experiments.tasks.one_hot_task_config
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dacapo.experiments.tasks.post_processors
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dacapo.experiments.tasks.post_processors.argmax_post_processor
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dacapo.experiments.tasks.post_processors.argmax_post_processor_parameters
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dacapo.experiments.tasks.post_processors.dummy_post_processor
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dacapo.experiments.tasks.post_processors.dummy_post_processor_parameters
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dacapo.experiments.tasks.post_processors.post_processor
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dacapo.experiments.tasks.post_processors.post_processor_parameters
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dacapo.experiments.tasks.post_processors.threshold_post_processor
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dacapo.experiments.tasks.post_processors.threshold_post_processor_parameters
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dacapo.experiments.tasks.post_processors.watershed_post_processor
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dacapo.experiments.tasks.post_processors.watershed_post_processor_parameters
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dacapo.experiments.tasks.predictors
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dacapo.experiments.tasks.predictors.affinities_predictor
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dacapo.experiments.tasks.predictors.distance_predictor
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dacapo.experiments.tasks.predictors.dummy_predictor
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dacapo.experiments.tasks.predictors.hot_distance_predictor
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dacapo.experiments.tasks.predictors.inner_distance_predictor
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dacapo.experiments.tasks.predictors.one_hot_predictor
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dacapo.experiments.tasks.predictors.predictor
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dacapo.experiments.tasks.pretrained_task
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dacapo.experiments.tasks.pretrained_task_config
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dacapo.experiments.tasks.task
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dacapo.experiments.tasks.task_config
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dacapo.experiments.trainers
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dacapo.experiments.trainers.dummy_trainer
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dacapo.experiments.trainers.dummy_trainer_config
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dacapo.experiments.trainers.gp_augments
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dacapo.experiments.trainers.gp_augments.augment_config
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dacapo.experiments.trainers.gp_augments.elastic_config
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dacapo.experiments.trainers.gp_augments.gamma_config
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dacapo.experiments.trainers.gp_augments.intensity_config
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dacapo.experiments.trainers.gp_augments.intensity_scale_shift_config
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dacapo.experiments.trainers.gp_augments.simple_config
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dacapo.experiments.trainers.gunpowder_trainer
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dacapo.experiments.trainers.gunpowder_trainer_config
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dacapo.experiments.trainers.optimizers
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dacapo.experiments.trainers.trainer
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dacapo.experiments.trainers.trainer_config
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dacapo.experiments.training_iteration_stats
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dacapo.experiments.training_stats
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dacapo.experiments.validation_iteration_scores
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dacapo.experiments.validation_scores
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dacapo.ext
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dacapo.gp
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dacapo.gp.copy
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dacapo.gp.dacapo_create_target
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dacapo.gp.dacapo_points_source
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dacapo.gp.elastic_augment_fuse
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dacapo.gp.gamma_noise
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dacapo.gp.product
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dacapo.gp.reject_if_empty
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dacapo.options
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dacapo.plot
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dacapo.predict
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dacapo.predict_local
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dacapo.store
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dacapo.store.array_store
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dacapo.store.config_store
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dacapo.store.conversion_hooks
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dacapo.store.converter
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dacapo.store.create_store
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dacapo.store.file_config_store
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dacapo.store.file_stats_store
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dacapo.store.local_array_store
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dacapo.store.local_weights_store
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dacapo.store.mongo_config_store
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dacapo.store.mongo_stats_store
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dacapo.store.stats_store
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dacapo.store.weights_store
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dacapo.tmp
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dacapo.train
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dacapo.utils
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dacapo.utils.affinities
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dacapo.utils.array_utils
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dacapo.utils.balance_weights
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dacapo.utils.pipeline
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dacapo.utils.view
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dacapo.utils.voi
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dacapo.validate
- DaCapoBlockwiseTask (class in dacapo.blockwise)
- DaCapoConfig (class in dacapo.options)
- DaCapoTargetFilter (class in dacapo.gp)
- database (dacapo.store.mongo_config_store.MongoConfigStore attribute), [1]
- DataKey (class in dacapo.experiments.datasplits.keys)
- Dataset (class in dacapo.experiments.datasplits.datasets)
- dataset (dacapo.experiments.datasplits.datasets.arrays.zarr_array_config.ZarrArrayConfig attribute), [1]
- dataset_type (dacapo.experiments.datasplits.datasets.dummy_dataset_config.DummyDatasetConfig attribute), [1]
- dataset_type() (dacapo.experiments.datasplits.datasets.simple.SimpleDataset static method)
- DatasetConfig (class in dacapo.experiments.datasplits.datasets)
- datasets (dacapo.experiments.datasplits.datasplit_generator.DataSplitGenerator attribute), [1]
- DatasetSpec (class in dacapo.experiments.datasplits)
- DatasetType (class in dacapo.experiments.datasplits.datasplit_generator)
- DataSplit (class in dacapo.experiments.datasplits)
- datasplit (dacapo.experiments.run.Run attribute)
- datasplit_config (dacapo.experiments.run_config.RunConfig attribute)
- datasplit_type (dacapo.experiments.datasplits.dummy_datasplit_config.DummyDataSplitConfig attribute), [1]
- datasplit_type() (dacapo.experiments.datasplits.simple_config.SimpleDataSplitConfig static method)
- DataSplitConfig (class in dacapo.experiments.datasplits)
- DataSplitGenerator (class in dacapo.experiments.datasplits)
- datasplits (dacapo.store.config_store.ConfigStore attribute), [1]
- db_host (dacapo.store.mongo_config_store.MongoConfigStore attribute), [1]
- db_name (dacapo.store.mongo_config_store.MongoConfigStore attribute), [1]
- default_config (dacapo.experiments.datasplits.datasets.arrays.concat_array_config.ConcatArrayConfig attribute), [1]
- default_parameters (in module dacapo.blockwise.empanada_function)
- delete_after() (dacapo.experiments.training_stats.TrainingStats method)
- delete_architecture_config() (dacapo.store.config_store.ConfigStore method), [1]
- delete_array_config() (dacapo.store.config_store.ConfigStore method), [1]
- delete_config() (dacapo.store.config_store.ConfigStore method), [1]
- delete_datasplit_config() (dacapo.store.config_store.ConfigStore method), [1]
- delete_run_config() (dacapo.store.config_store.ConfigStore method), [1]
- delete_task_config() (dacapo.store.config_store.ConfigStore method), [1]
- delete_trainer_config() (dacapo.store.config_store.ConfigStore method), [1]
- delete_training_stats() (dacapo.store.file_stats_store.FileStatsStore method)
- delete_validation_scores() (dacapo.store.mongo_stats_store.MongoStatsStore method)
- deprecated_start_neuroglancer() (dacapo.utils.view.NeuroglancerRunViewer method), [1]
- detection_threshold (dacapo.experiments.tasks.dummy_task_config.DummyTaskConfig attribute), [1]
- device (dacapo.compute_context.Bsub property)
- device() (dacapo.compute_context.Bsub method)
- dice (dacapo.experiments.tasks.evaluators.binary_segmentation_evaluation_scores.BinarySegmentationEvaluationScores attribute), [1]
- dice() (dacapo.experiments.tasks.evaluators.binary_segmentation_evaluator.ArrayEvaluator method), [1]
- DilatePoints (class in dacapo.utils.pipeline)
- dilations (dacapo.utils.pipeline.DilatePoints attribute), [1]
- dims (dacapo.experiments.architectures.Architecture property)
- dims() (dacapo.experiments.architectures.Architecture method)
- distance_loss (dacapo.experiments.tasks.losses.hot_distance_loss.HotDistanceLoss attribute)
- distance_loss() (dacapo.experiments.tasks.losses.hot_distance_loss.HotDistanceLoss method)
- DistanceArray (class in dacapo.experiments.arraytypes)
- DistancePredictor (class in dacapo.experiments.tasks.predictors)
- DistanceTask (class in dacapo.experiments.tasks)
- DistanceTaskConfig (class in dacapo.experiments.tasks)
- distribute_workers (dacapo.compute_context.Bsub attribute)
- divide_columns() (in module dacapo.utils.voi)
- divide_rows() (in module dacapo.utils.voi)
- do_augment (dacapo.gp.elastic_augment_fuse.ElasticAugment attribute)
- does_new_best_exist() (dacapo.utils.view.BestScore method), [1]
- down (dacapo.experiments.architectures.cnnectome_unet.Downsample attribute), [1]
- Downsample (class in dacapo.experiments.architectures.cnnectome_unet)
- downsample (dacapo.experiments.datasplits.datasets.arrays.resampled_array_config.ResampledArrayConfig attribute), [1]
- downsample_factor (dacapo.experiments.architectures.cnnectome_unet.Downsample attribute), [1]
- downsample_factors (dacapo.experiments.architectures.cnnectome_unet.CNNectomeUNet attribute), [1]
- downsample_lsds (dacapo.experiments.tasks.affinities_task_config.AffinitiesTaskConfig attribute), [1]
- drop_channels (dacapo.gp.copy.CopyMask attribute), [1]
- ds (dacapo.utils.view.BestScore attribute)
- dt_scale_factor (dacapo.experiments.tasks.predictors.distance_predictor.DistancePredictor attribute)
- DummyArchitecture (class in dacapo.experiments.architectures)
- DummyArchitectureConfig (class in dacapo.experiments.architectures)
- DummyArrayConfig (class in dacapo.experiments.datasplits.datasets.arrays)
- DummyDataset (class in dacapo.experiments.datasplits.datasets)
- DummyDatasetConfig (class in dacapo.experiments.datasplits.datasets)
- DummyDataSplit (class in dacapo.experiments.datasplits)
- DummyDataSplitConfig (class in dacapo.experiments.datasplits)
- DummyEvaluationScores (class in dacapo.experiments.tasks.evaluators)
- DummyEvaluator (class in dacapo.experiments.tasks.evaluators)
- DummyLoss (class in dacapo.experiments.tasks.losses)
- DummyPostProcessor (class in dacapo.experiments.tasks.post_processors)
- DummyPostProcessorParameters (class in dacapo.experiments.tasks.post_processors)
- DummyPredictor (class in dacapo.experiments.tasks.predictors)
- DummyTask (class in dacapo.experiments.tasks)
- DummyTaskConfig (class in dacapo.experiments.tasks)
- DummyTrainer (class in dacapo.experiments.trainers)
- DummyTrainerConfig (class in dacapo.experiments.trainers)
- DuplicateNameError
- DVIDArrayConfig (class in dacapo.experiments.datasplits.datasets.arrays)
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